Meta-MEME, Version 2.01

Technology Description

A software toolkit for building motif-based hidden Markov models ("HMM") of families of related DNA or protein sequences.  It combines multiple motif models created by MEME into a single HMM.  This HMM can be trained (by the software) via expectation-maximization, and the resulting trained model can be used to produce a motif based multiple sequence alignment and search a protein database for homologs. 

Further information about Meta-MEME can be found at the web address, www.sdsc.edu/Software.  Click on "Molecular Biology Software".